Department of Biomedical Engineering   
Group of Bioinformatics and Biophysics of Nanopores
Home | Login
 
 
Download
Description Files
3D PNP solver for nanopores V09.14pub (software used in Kotulska et al. CRC Press 2010)
A zip archive of Matlab scripts for symmetrical conical pore
3D PNP solver for protein channels V13pub (software used in Dyrka et al. Proteins 2013)
A zip archive of Matlab scripts including the quick start guide
GOBA - Model Quality Assessment Programe
GOBA - source files
GOBA - formated function annotation database
GO terms annotations (based on GOA_uniprot 05_2012)
GO terms annotations
Ion Current Analyser v.2.0
ICA - application for analysing the outputs of GCMC/BD simulations (http://www.charmm-gui.org/?doc=input/gcmcbd). MATLAB Compiler Runtime (MCR) version 7.17 (R2012a) is required (http://www.mathworks.com/products/compiler/mcr/index.html).
Student's project
"Another Ordinary Snake Player" - the name explains everything - this is another (but not tiresome!) edition of a well known casual video game: "Snake", this time implemented in Matlab. MATLAB Compiler Runtime (MCR) version 7.17 (R2012a)(http://www.mathworks.com/products/compiler/mcr/index.html) and 64-bit operating system required. by Wojciech Cichowski
go_goa_analysis
A package of bash scripts and C++ programs for analyzing GO annotation files (by BM Konopka).
go_goa_ss_calc
A package of bash scripts and C++ programs for calculating Gene Ontology based functional semantic similarities between proteins (by BM Konopka).
Home | Up
© 2009 Paweł P. Woźniak, Witold Dyrka - Powered by Marcin Masalski
administrative contact: pawel.p.wozniak@pwr.edu.pl